[DAS2] biopackages DAS/2 server passed validation

Helt,Gregg Gregg_Helt at affymetrix.com
Wed Nov 15 02:45:00 UTC 2006


Thanks!  Looks like most of the problem IGB was having with the
biopackages server were due to the truncated 'type' attributes in
CAPABILITY.

Using IGB I'm still not getting features back from the biopackages
server from a features query with overlaps and type filters, but I think
that's a bug in IGB's request.  Hope to fix tonight.

	Gregg

> -----Original Message-----
> From: das2-bounces at lists.open-bio.org [mailto:das2-bounces at lists.open-
> bio.org] On Behalf Of Brian O'Connor
> Sent: Tuesday, November 14, 2006 4:46 PM
> To: das2 at lists.open-bio.org
> Subject: [DAS2] biopackages DAS/2 server passed validation
> 
> Hi,
> 
> I finished validating the DAS/2 server at biopackages.net using
Andrew's
> validator.  After making a few small tweaks all document types pass.
> Here are the URLs I validated with:
> 
> * http://das.biopackages.net/das/genome
> * http://das.biopackages.net/das/genome/human/17/segment
> * http://das.biopackages.net/das/genome/human/17/type
> *
>
http://das.biopackages.net/das/genome/human/17/feature?segment=http%3A%2
F%
>
2Fwww.ncbi.nlm.nih.gov%2Fgenome%2FH_sapiens%2FB36.1%2Fdna%2Fchr1;overlap
s=
> 1:1000
> 
> I also fixed the bug with the "type" attribute in the CAPABILITY
> elements.  They now are "features", "types", or "segments" to be
> compliant with the spec.
> 
> --Brian
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