[DAS] RELAX NG schema for "sequence" command

[Andrew Roberts]

Ah, interesting. I'm exercising my implementations of the das commands, and then validating the XML against the rng as a correctness test. I had been assuming that the rng was a description of all possible server responses, including error cases, but I now see what you guys are using them for. 

Thanks!



On Mar 1, 2011, at 10:54 AM, Jonathan Warren <jw12 at sanger.ac.uk> wrote:

> Hi Andrew
> 
> I guess this depends on what you are using the RNG for. What are you using it for? The registry needs the result from a sequence request to conform to the sequence.rng as it is on the registry as if a sequence is requested the test region put into the registry should return a sequence, if it returns an ERRORSEGMENT the the registry wants that reported as invalid. If I add the errorsegment to that document as you suggest the registry won't pick it up as invalid.
> 
> On 1 Mar 2011, at 15:19, Andrew Roberts wrote:
> 
>>    Alright, now I'm hitting the lack of support for ERRORSEGMENT within the sequence command response.  I think there needs to be a choice inside the oneOrMore, so that elements can be SEQUENCE or ERRORSEGMENT.  I attached what I'm using as a testing schema in the meantime, hopefully it's helpful.
>> 
>> Andrew
>> <sequence.rng>
>> 
>> 
>> On Mar 1, 2011, at 5:09 AM, Jonathan Warren wrote:
>> 
>>> This is fixed now.
>>> 
>>> On 28 Feb 2011, at 18:34, Andrew Roberts wrote:
>>> 
>>>> Hello,
>>>> 
>>>>    I'm working on some validations, and I think I may have found an error in sequence.rng (www.dasregistry.org/validation1.6/sequence.rng).  It appears that this schema makes no provision for the actual text data that belongs to the sequence element (i.e. the bases themselves).  Is this a known issue?
>>>> 
>>>>    If not, I think the solution is to add a <text/> element inside the sequence element.  Line 10 should read,
>>>> 
>>>>            <attribute name="start"><data type="integer"></data></attribute><attribute name="stop"><data type="integer"></data></attribute><optional><attribute name="version"><text></text></attribute></optional><optional><attribute name="label"><text></text></attribute></optional><text/></element>
>>>> 
>>>> Cheers,
>>>> 
>>>> Andrew
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>>> 
>>> Jonathan Warren
>>> Senior Developer and DAS coordinator
>>> blog: http://biodasman.wordpress.com/
>>> jw12 at sanger.ac.uk
>>> Ext: 2314
>>> Telephone: 01223 492314
>>> 
>>> 
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>>> -- 
>>> The Wellcome Trust Sanger Institute is operated by Genome ResearchLimited, a charity registered in England with number 1021457 and acompany registered in England with number 2742969, whose registeredoffice is 215 Euston Road, London, NW1 2BE.
>> 
> 
> Jonathan Warren
> Senior Developer and DAS coordinator
> blog: http://biodasman.wordpress.com/
> jw12 at sanger.ac.uk
> Ext: 2314
> Telephone: 01223 492314
> 
> 
> 
> 
> 
> 
> 
> 
> 
> -- 
> The Wellcome Trust Sanger Institute is operated by Genome ResearchLimited, a charity registered in England with number 1021457 and acompany registered in England with number 2742969, whose registeredoffice is 215 Euston Road, London, NW1 2BE.