[DAS] RELAX NG schema for "sequence" command

[Jonathan Warren]

Hi Andrew

I guess this depends on what you are using the RNG for. What are you  
using it for? The registry needs the result from a sequence request to  
conform to the sequence.rng as it is on the registry as if a sequence  
is requested the test region put into the registry should return a  
sequence, if it returns an ERRORSEGMENT the the registry wants that  
reported as invalid. If I add the errorsegment to that document as you  
suggest the registry won't pick it up as invalid.

On 1 Mar 2011, at 15:19, Andrew Roberts wrote:

> 	Alright, now I'm hitting the lack of support for ERRORSEGMENT  
> within the sequence command response.  I think there needs to be a  
> choice inside the oneOrMore, so that elements can be SEQUENCE or  
> ERRORSEGMENT.  I attached what I'm using as a testing schema in the  
> meantime, hopefully it's helpful.
>
> Andrew
> <sequence.rng>
>
>
> On Mar 1, 2011, at 5:09 AM, Jonathan Warren wrote:
>
>> This is fixed now.
>>
>> On 28 Feb 2011, at 18:34, Andrew Roberts wrote:
>>
>>> Hello,
>>>
>>> 	I'm working on some validations, and I think I may have found an  
>>> error in sequence.rng (www.dasregistry.org/validation1.6/sequence.rng) 
>>> .  It appears that this schema makes no provision for the actual  
>>> text data that belongs to the sequence element (i.e. the bases  
>>> themselves).  Is this a known issue?
>>>
>>> 	If not, I think the solution is to add a <text/> element inside  
>>> the sequence element.  Line 10 should read,
>>>
>>>             <attribute name="start"><data type="integer"></data></ 
>>> attribute><attribute name="stop"><data type="integer"></data></ 
>>> attribute><optional><attribute name="version"><text></text></ 
>>> attribute></optional><optional><attribute name="label"><text></ 
>>> text></attribute></optional><text/></element>
>>>
>>> Cheers,
>>>
>>> Andrew
>>> _______________________________________________
>>> DAS mailing list
>>> DAS at lists.open-bio.org
>>> http://lists.open-bio.org/mailman/listinfo/das
>>
>> Jonathan Warren
>> Senior Developer and DAS coordinator
>> blog: http://biodasman.wordpress.com/
>> jw12 at sanger.ac.uk
>> Ext: 2314
>> Telephone: 01223 492314
>>
>>
>>
>>
>>
>>
>>
>>
>>
>> -- 
>> The Wellcome Trust Sanger Institute is operated by Genome  
>> ResearchLimited, a charity registered in England with number  
>> 1021457 and acompany registered in England with number 2742969,  
>> whose registeredoffice is 215 Euston Road, London, NW1 2BE.
>

Jonathan Warren
Senior Developer and DAS coordinator
blog: http://biodasman.wordpress.com/
jw12 at sanger.ac.uk
Ext: 2314
Telephone: 01223 492314









-- 
 The Wellcome Trust Sanger Institute is operated by Genome Research 
 Limited, a charity registered in England with number 1021457 and a 
 company registered in England with number 2742969, whose registered 
 office is 215 Euston Road, London, NW1 2BE.