[DAS] Finding the ADAM2 Gene via Ensembl DAS

[Lincoln Stein]

To find all the ADAM genes in gbrowse, type ADAM* into the search box and hit 
<enter>.

BTW, I'm having a mini DAS-hackathon this week at CSHL to fix up the protocol 
so that named features can be retrieved in a more sensible way.  We've got 
gbrowse running on top of DAS, but would like the search interface to work as 
well on top of DAS as it does on top of a GFF database.  It annoys me no end 
that searching for ADAM2 returns all the exons as well as the genes.

Lincoln

On Monday 20 January 2003 06:07 am, Matthew Pocock wrote:
> Hi Brian,
>
> I do when dumping out contigs for analysis. Of course, there are lots of
> convenient ways to do this in BioJava without the features /living/ in
> contig space. As a data-consumer, I don't care what coordinates the
> protocol uses as long as the toolkit I interact with can project them to
> the one I want to use. As a data-publisher, I just want to publish
> features in the easiest coordiante system. If I've annotated a contig, I
> want to publish in those coordinates.
>
> Matthew
>
> Brian Gilman wrote:
> >     Do people who use the Ensembl DAS server ever go after reads or
> > contigs?? Or do people just use Thomas' convenience methods??
> >
> >                         Best,
> >
> >                             -B
>
> _______________________________________________
> DAS mailing list
> DAS at biodas.org
> http://biodas.org/mailman/listinfo/das

-- 
========================================================================
Lincoln D. Stein                           Cold Spring Harbor Laboratory
lstein at cshl.org			                  Cold Spring Harbor, NY
	1 Bungtown Road, Cold Spring Harbor, NY 11724
========================================================================