[DAS] Finding the ADAM2 Gene via Ensembl DAS

[Matthew Pocock]

Hi Brian,

I do when dumping out contigs for analysis. Of course, there are lots of 
convenient ways to do this in BioJava without the features /living/ in 
contig space. As a data-consumer, I don't care what coordinates the 
protocol uses as long as the toolkit I interact with can project them to 
the one I want to use. As a data-publisher, I just want to publish 
features in the easiest coordiante system. If I've annotated a contig, I 
want to publish in those coordinates.

Matthew

Brian Gilman wrote:
>     Do people who use the Ensembl DAS server ever go after reads or
> contigs?? Or do people just use Thomas' convenience methods??
> 
>                         Best,
> 
>                             -B