[BioRuby] The second BioRuby IRC conference on Dec 23rd

Pjotr Prins pjotr.public14 at thebird.nl
Fri Dec 31 14:40:04 UTC 2010

Today I fixed a few bug in the GFF3 parser. The problem was the use
of phase in CDSs. By default it is not used, and now everything
appears to pass. 

It is available as a bio-gff3 bioruby plugin on rubygems. 


or my github repo 


which has the README.

For example, fetch mRNA and CDS information from GFF3 files and
output to FASTA:

  gff3-fetch mrna test/data/gff/test.gff3
  gff3-fetch cds test/data/gff/test.gff3

On Fri, Dec 24, 2010 at 08:34:36AM +0100, Pjotr Prins wrote:
> The plugin system appears to be functional - great stuff Raoul.

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