[BioRuby-cvs] bioruby/lib/bio/appl/blast format0.rb, 1.11, 1.12 report.rb, 1.8, 1.9

[Katayama Toshiaki]

Update of /home/repository/bioruby/bioruby/lib/bio/appl/blast
In directory pub.open-bio.org:/tmp/cvs-serv17319/lib/bio/appl/blast

Modified Files:
	format0.rb report.rb 
Log Message:
* 'alias :foo :bar' is changed to 'alias foo bar'


Index: report.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/appl/blast/report.rb,v
retrieving revision 1.8
retrieving revision 1.9
diff -C2 -d -r1.8 -r1.9
*** report.rb	9 Sep 2005 15:15:51 -0000	1.8
--- report.rb	26 Sep 2005 13:00:04 -0000	1.9
***************
*** 99,103 ****
          end
        end
!       alias :each :each_hit
  
        # shortcut for the last iteration's hits
--- 99,103 ----
          end
        end
!       alias each each_hit
  
        # shortcut for the last iteration's hits
***************
*** 160,166 ****
          # Compatible with Bio::Fasta::Report::Hit
  
!         alias :target_id :accession
!         alias :target_def :definition
!         alias :target_len :len
  
          # Shortcut methods for the best Hsp
--- 160,166 ----
          # Compatible with Bio::Fasta::Report::Hit
  
!         alias target_id accession
!         alias target_def definition
!         alias target_len len
  
          # Shortcut methods for the best Hsp
***************
*** 211,215 ****
    begin			# p is suitable than pp for the following test script
      require 'pp'
!     alias :p :pp
    rescue
    end
--- 211,215 ----
    begin			# p is suitable than pp for the following test script
      require 'pp'
!     alias p pp
    rescue
    end

Index: format0.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/appl/blast/format0.rb,v
retrieving revision 1.11
retrieving revision 1.12
diff -C2 -d -r1.11 -r1.12
*** format0.rb	9 Sep 2005 14:59:53 -0000	1.11
--- format0.rb	26 Sep 2005 13:00:04 -0000	1.12
***************
*** 114,118 ****
            end
          end
!         alias :each :each_hit
  
          # shortcut for the last iteration's hits
--- 114,118 ----
            end
          end
!         alias each each_hit
  
          # shortcut for the last iteration's hits
***************
*** 620,626 ****
  
            # Compatible with Bio::Fasta::Report::Hit
!           #alias :target_id :accession
!           alias :target_def :definition
!           alias :target_len :len
  
            # Shortcut methods for the best Hsp
--- 620,626 ----
  
            # Compatible with Bio::Fasta::Report::Hit
!           #alias target_id accession
!           alias target_def definition
!           alias target_len len
  
            # Shortcut methods for the best Hsp