[Bioperl-l] free software to estimate dS and dN in pairwise comparisons

Fields, Christopher J cjfields at illinois.edu
Thu Jan 12 15:11:45 UTC 2017

Hi Roy,

Yup, this is the thread that touched off a lot of this current discussion.  The concern I have is that the intent seems to be there to GPL it all, but there has been a fair lack of momentum (the discussion spans about a year).


On 1/12/17, 8:54 AM, "Bioperl-l on behalf of Roy Chaudhuri" <bioperl-l-bounces+cjfields=illinois.edu at mailman.open-bio.org on behalf of roy.chaudhuri at gmail.com> wrote:

    Hi Carnë,
    Not sure if you have seen this thread on the PAML Google group?:
    Perhaps you could offer to help there? Professor Yang specifically 
    states on the website that he will not answer queries about PAML by e-mail.
    On 12/01/2017 14:27, Carnë Draug wrote:
    > On 11 January 2017 at 15:13, Roy Chaudhuri <roy.chaudhuri at gmail.com> wrote:
    >> [...] The more sophisticated models implemented in
    >> PAML (codeml and yn00) are probably a better bet if you can sort out the
    >> licence issue.
    > Since it seems they do want to change the licence to GPL, I sent an
    > email to Professor Ziheng Yang offering my help to solve this issue
    > for them.  If someone happens to know him personally, would be nice
    > if you could nudge him and suggest him to accept my help (under my
    > real name David).
    > Carnë
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