[Bioperl-l] module Bio::TreeIO

[Fields, Christopher J]

On May 10, 2016, at 10:51 AM, Youensclark, Ken - (kyclark) <kyclark at email.arizona.edu> wrote:
> 
> On May 10, 2016, at 5:54 AM, lskatz <lskatz at gmail.com> wrote:
>> 
>> That's what I thought originally too but the R package made it look like
>> there might be some magic bootstrapping going on with distances alone.  If
>> there truly is no distance-matrix bootstrapping algorithm then I am left to
>> my devices and at least I can make use of assess_bootstrap().
> 
> I'm following this thread with interest not because I have anything to add about the Perl but because I've been using MinHash in an all-vs-all sample comparison application that runs on the stampede cluster at TACC:
> 
> 	https://github.com/hurwitzlab/stampede-mash
> 
> I'd love to know what all you're doing with a distance matrix as far as analysis and visualization.
> 
> Ken

Nice, we’ve been looking into mash as well for the same reasons.  Nothing to report yet unfortunately (we haven’t even started).

chris