[Bioperl-l] Heads up: bioperl release candidate

[Chris Fields]

> On Jul 11, 2016, at 8:13 AM, Charles Plessy <plessy at debian.org> wrote:
> 
> Le Thu, Jul 07, 2016 at 10:20:18AM -0400, Michael Crusoe a écrit :
>> 
>> If someone would like to try updating the Debian package with the release
>> candidate and testing it that would be useful:
>> 
>> https://cpan.metacpan.org/authors/id/C/CJ/CJFIELDS/BioPerl-1.007000_003.tar.gz
> 
> Hi Michael and everybody,
> 
> I tested the packaging of /BioPerl-1.007000_004.tar.gz, and it went fine.  Some
> regression tests could not be run as not all the optional modules and software
> were installed on my laptop.
> 
> Our automated test did not report anything significant.  Here is a copy of the
> typos it found.
> 
> I: bioperl: spelling-error-in-manpage usr/share/man/man1/bp_biogetseq.1p.gz retrives retrieves
> I: bioperl: spelling-error-in-manpage usr/share/man/man1/bp_extract_feature_seq.1p.gz specifed specified
> I: bioperl: spelling-error-in-manpage usr/share/man/man1/bp_hivq.1p.gz retreive retrieve
> I: bioperl: spelling-error-in-manpage ... use --no-tag-display-limit to see all (or pipe to a file/program)
> W: bioperl: manpage-has-bad-whatis-entry usr/share/man/man1/bp_netinstall.1p.gz
> W: bioperl: manpage-has-bad-whatis-entry usr/share/man/man1/bp_search2gff.1p.gz
> W: bioperl: manpage-has-bad-whatis-entry usr/share/man/man1/bp_seqcut.1p.gz
> I: libbio-perl-perl: spelling-error-in-manpage usr/share/man/man3/Bio::Align::AlignI.3pm.gz wont won't
> I: libbio-perl-perl: spelling-error-in-manpage usr/share/man/man3/Bio::AnalysisI.3pm.gz refrence reference
> I: libbio-perl-perl: spelling-error-in-manpage usr/share/man/man3/Bio::AnalysisI.3pm.gz folowing following
> I: libbio-perl-perl: spelling-error-in-manpage ... use --no-tag-display-limit to see all (or pipe to a file/program)
> W: libbio-perl-perl: manpage-has-bad-whatis-entry usr/share/man/man3/Bio::Index::Stockholm.3pm.gz
> W: libbio-perl-perl: manpage-has-bad-whatis-entry usr/share/man/man3/Bio::OntologyIO::Handlers::BaseSAXHandler.3pm.gz
> W: libbio-perl-perl: manpage-has-bad-whatis-entry usr/share/man/man3/Bio::OntologyIO::obo.3pm.gz
> W: libbio-perl-perl: manpage-has-bad-whatis-entry ... use --no-tag-display-limit to see all (or pipe to a file/program)
> W: libbio-perl-perl: manpage-has-errors-from-man usr/share/man/man3/Bio::SeqIO::bsml.3pm.gz 361: warning [p 4, 0.2i]: can't break line
> 
> Have a nice day,
> 
> Charles
> 
> -- 
> Charles Plessy
> Debian Med packaging team,
> http://www.debian.org/devel/debian-med
> Tsurumi, Kanagawa, Japan

Thanks Charles!  I’ll link to this as a bug report for doc fixes.

chris