[Bioperl-l] using Bio::SeqIO to convert from table to genbank format ..... attribute_map example

Brian Osborne bosborne11 at verizon.net
Mon Sep 21 14:32:48 UTC 2015


Malcolm,

Done, in master. That “can not write to a generic …” error was due to the fact that write_seq() is not implemented for SeqIO::table, but someone forgot to put an “empty” write_seq() method into the module to catch any attempts. Fixed.

Brian O.

> On Sep 21, 2015, at 9:18 AM, Brian Osborne <bosborne11 at verizon.net> wrote:
> 
> Working on this ….
> 
>> On Sep 14, 2015, at 10:44 AM, Cook, Malcolm <MEC at stowers.org <mailto:MEC at stowers.org>> wrote:
>> 
>> '$out = Bio::SeqIO->new(-format => qq{table});
> 
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l at mailman.open-bio.org
> http://mailman.open-bio.org/mailman/listinfo/bioperl-l

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mailman.open-bio.org/pipermail/bioperl-l/attachments/20150921/036ea813/attachment.html>


More information about the Bioperl-l mailing list