[Bioperl-l] Using Utilities to retrieve multiple coding sequences for identical (WP_) protein sequences

[Peter Cock]

Good point. Ivan Erill asked about this on the Biopython list late
last year - presumably the same solution would apply there too?:

http://lists.open-bio.org/pipermail/biopython/2014-October/015438.html

See also:
ftp://ftp.ncbi.nlm.nih.gov/refseq/release/announcements/WP-proteins-06.10.2013.pdf

Peter

On Mon, Apr 27, 2015 at 6:35 PM, Warren Gallin <wgallin at ualberta.ca> wrote:
> With the advent of the WP_   accession series in RefSeq there is no longer a direct link between a single protein sequence and its encoding nucleotide sequence.
>
> It is possible to find the multiple individual nucleotide records encoding the identical protein sequences on the Web interface through the “Identical Proteins” link, which generates a list of all of the coding sequences for the identical protein sequence.
>
> Is there any way to work through these linkages using Bio::DB::Utilities?
>
> Thanks,
>
> Warren Gallin
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