[Bioperl-l] warning: Bio::Index::Fastq;

[Fields, Christopher J]

On Mar 11, 2014, at 10:45 AM, Peter Cock <p.j.a.cock at googlemail.com> wrote:

> On Tue, Mar 11, 2014 at 3:35 PM, EpiMAN <eh_mcb at yahoo.com> wrote:
>> I tried the latest version but I get the same warning!
>> 
> 
> Can you show the context of these problem lines as
> I suggested earlier? We would need to see a few lines
> before and after the problem line, in order to see if there
> is anything obviously wrong with the file - and/or make
> a test case.
> 
> e.g.
> 
> grep -C 10 "^@@DDDDDFFFFFIIIDCBBBB"
> 
> Peter

Yes, what Peter suggests would help tremendously. I’m pretty convinced its the old indexing bug back again.

chris