[Bioperl-l] dependencies in emboss.pm
florent.angly at gmail.com
Fri Mar 7 10:09:55 UTC 2014
The module Bio::Emboss::Methods is located in the bioperl-run package. Have
you installed bioperl-run in addition to bioperl-live?
On Fri, Mar 7, 2014 at 7:10 PM, Yoshiro Nagao <ng999 at yahoo.co.jp> wrote:
> First, please let me apologize to you for this primitive question about
> installation (if there is more proper mailing list for this sort of
> please let me know one).
> I tried to run the following tutorial script on my Ubuntu 12:
> Since Bio::Factory::Emboss was not installed in my Ubuntu,
> I downloaded and installed Bio-Emboss-18.104.22.168.tar.gz from
> Then, I modified the aligntutorial.pl as in:
> use lib "/home/usr/Bio-Emboss-22.214.171.124";
> use Emboss;
> #use Bio::Factory::Emboss;
> However, when I ran the aligntutorial.pl, another error message
> Can't locate Bio/Emboss/Methods.pm
> Perhaps, I 'installed' the emboss very wrongly.
> How can I install the emboss module nicely, so that
> I do not have to rewrite the aligntutorial.pl or modules, or
> whatever other scripts on the GitHub site?
> Sorry for the silly question.
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