[Bioperl-l] FastAlign.pl, an example of bioperl script

Jason Stajich jason.stajich at gmail.com
Wed Jul 17 20:17:15 UTC 2013

thanks for contributing - you can edit the wiki page to add link to your code so no intervention by us should be necessary since it is a wiki. 

On Jun 20, 2013, at 11:06 AM, Antony Vincent <a.vincent.0312 at gmail.com> wrote:

> Hi,
> I did a bioperl script which uses the heuristic method of tfasty. The query
> string is in amino acids and the hit string is in nucleotides. There are
> extra nucleotides at the end of the hit string (option -diff and by default
> = 10), that allow to verify if the intron start with common rules
> (5'-GTGCGA-... for group II intron and after an exonic T for group I
> intron).
> If you want add my script to this page:
> http://www.bioperl.org/wiki/Bioperl_scripts in the examples section, i will
> be glad to help the bioperl community.
> Here is my sourceforge link: http://sourceforge.net/projects/fastalignpl/
> Thanks,
> Antony
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Jason Stajich
jason.stajich at gmail.com
jason at bioperl.org

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