[Bioperl-l] Sequence Format Converting Using Bio::AlignIO

Fields, Christopher J cjfields at illinois.edu
Sun Jul 14 03:43:26 UTC 2013

You can set idlength() with Bio::AlignIO::phylip, looking at the write_aln() method sitting that should allow writing longer IDs.  


On Jul 13, 2013, at 3:04 AM, cacaucenturion2 <cacaucenturion2 at gmail.com> wrote:

> Hi all,
> I want to convert my sequence format from fasta to phylip using Bio::AlignIO. However, if the title of a sequence has more than 10 characters, the rest of the title will be cut off. For example, the tile '123456789-12345' will be changed to '123456789-' after format converting. Would anyone let me know how to keep the full name of my original data? Thanks a lot!
> Sincerely yours,
> Cacau Centurion
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