[Bioperl-l] Bio::Tools::SeqStats to count bases

Roy Chaudhuri roy.chaudhuri at gmail.com
Mon Feb 4 17:51:03 UTC 2013


Sorry, I'd missed another problem in your code - you are trying to
load a fasta file using Bio::PrimarySeq. To read sequence data from a
file you should use Bio::SeqIO, see:

http://www.bioperl.org/wiki/HOWTO:Beginners#Retrieving_a_sequence_from_a_file
http://www.bioperl.org/wiki/HOWTO:SeqIO

Cheers,
Roy.



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