[Bioperl-l] BioPerl 1.6.901 and prot4est

[Horácio Montenegro]

   hi Chris,

   yes, I reported this behaviour to the prot4est author a couple of
months ago, but got only an automated reply - it says he is the only
developer and is not always able to answer. I also tried to contact
Sendu Bala, the maintainer (as found on Bioperl 1.6.1 source), but got
no reply either.

   I will try do debug a bit more, and then I will submit a bug report.

   thanks,
        Horacio

On Mon, May 21, 2012 at 2:43 PM, Fields, Christopher J
<cjfields at illinois.edu> wrote:
> Horácio,
>
> Re: where the bug lies, it's hard to say.  There have been several significant changes with bioperl's Taxonomy/Tree code over the last several years.  Does the prot4est author (James Wasmuth) know about this?
>
>   http://www.compsysbio.org/lab/?q=prot4EST
>
> You are also more than welcome to submit a bug report on this so we can track it.  The following page describes how and where to do so:
>
>   http://www.bioperl.org/wiki/Bugs
>
> (if you hear anything from the prot4est folks let us know)
>
> chris
>
>