[Bioperl-l] [bioperl-live] genbank_ref_extractor: new script to make search on entrez gene and retrieve related sequences (#23)

[Brian Osborne]

Carne,

This is impressive looking, it is now in scripts/.

Thanks again,

Brian O.

On Sep 21, 2011, at 11:25 AM, Carnë Draug wrote:

> Hi
> 
> I wrote a script with bioperl that I would like to share back. It takes a list of searches for Entrez Gene and attempts to retrieve the related sequences (genomic, transcripts and proteins). It is also possible to obtain extra upstream and downstream bp for genomic sequences and control the naming of the files. In the end it can save all the results in a CSV file.
> 
> Hope you find it up to your coding standards. Suggestions for improvements are welcome, including for a better name.
> 
> Carnë
> 
> You can merge this Pull Request by running:
> 
>  git pull https://github.com/carandraug/bioperl-live bp_genbank_ref_extractor
> 
> Or you can view, comment on it, or merge it online at:
> 
>  https://github.com/bioperl/bioperl-live/pull/23
> 
> -- Commit Summary --
> 
> * genbank_ref_extractor: new script to make search on entrez gene and retrieve related sequences
> 
> -- File Changes --
> 
> A scripts/Bio-DB-EUtilities/bp_genbank_ref_extractor.pl (1064)
> 
> -- Patch Links --
> 
>  https://github.com/bioperl/bioperl-live/pull/23.patch
>  https://github.com/bioperl/bioperl-live/pull/23.diff
> 
> -- 
> Reply to this email directly or view it on GitHub:
> https://github.com/bioperl/bioperl-live/pull/23