[Bioperl-l] Reading protein from file - error
sukeerthi teja Rallapalli
tejaminnu at gmail.com
Mon May 30 03:12:12 UTC 2011
Hi,
I have been trying to execute this program and i am getting an error. Kindly
help me.
#!usr/bin/perl -w
# The filename of the file which contains the protein sequence
$proteinfilename =
'/users/sukeerthiteja/desktop/perl/NM_021964fragment.pep';
# First open the file and associate a filehandle with it. for readability
purpose lets use the filehandle PROTEINFILE.
open(PROTEINFILE, $proteinfilename);
# Now we do the actual reading of the protein sequence data from the file,by
using < > to get
# input from the filehandle. We store the data into variable $protein
$protein = <PROTEINFILE>;
#now that we got our data we can close the file
close PROTEINFILE;
#Print the protein onto the screen
print "Here is the protein:\n\n";
print $protein;
exit;
ERROR:
sukeerthi-tejas-macbook-pro:desktop sukeerthiteja$ perl 1.pl
Here is the protein:
{\rtf1\ansi\ansicpg1252\cocoartf1038\cocoasubrtf350
I am not able to print the protein content on the screen.
Thank you
Regards
Teja
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