[Bioperl-l] Run PROSITE using bioperl

[Jun Yin]

Hi,

I don't think there is any module related with PROSITE in BioPerl. However,
PROSITE is based on RESTful service, which is a standard website structure.
You can use BioPerl or Perl packages to fetch the data by yourself.

I wrote a module last year for PROSITE using LWP and HTTP packages, though
it is not published with BioPerl. You can try this link and edit the code by
yourself. If you can not see the code, just let me know.

https://github.com/yinjun111/bioperl-live/blob/master/Bio/DB/Align/Prosite.p
m

Cheers,
Jun Yin
Ph.D. student in U.C.D.

Bioinformatics Laboratory
Conway Institute
University College Dublin


-----Original Message-----
From: bioperl-l-bounces at lists.open-bio.org
[mailto:bioperl-l-bounces at lists.open-bio.org] On Behalf Of Shachi Gahoi
Sent: Wednesday, May 11, 2011 7:21 AM
To: bioperl-l at lists.open-bio.org
Subject: [Bioperl-l] Run PROSITE using bioperl

I want to run PROSITE for my sequence remotely ( I want to run PROSITE
through my script) . Is there any module in BioPerl to run PROSITE and also
I want to parse "Domain signature" from PROSITE output.

Please tell me if anyone knows about module to run PROSITE and parse protein
domain signature form PROSITE output.

Thanks in advance

-- 
Regards,
Shachi
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