[Bioperl-l] Run PROSITE using bioperl

[Dave Messina]

Hi Shachi,

I thought PROSITE was a database rather than a program, but I might be
mistaken about that.

    http://www.expasy.org/prosite/

There is an (old) program for comparing a sequence against the PROSITE
library called pfscan, which I believe can be run with bioperl-run using
Bio::Tools::Run::Profile

http://doc.bioperl.org/bioperl-run/lib/Bio/Tools/Run/Profile.html



Dave



On Wed, May 11, 2011 at 08:20, Shachi Gahoi <shachigahoimbi at gmail.com>wrote:

> I want to run PROSITE for my sequence remotely ( I want to run PROSITE
> through my script) . Is there any module in BioPerl to run PROSITE and also
> I want to parse "Domain signature" from PROSITE output.
>
> Please tell me if anyone knows about module to run PROSITE and parse
> protein
> domain signature form PROSITE output.
>
> Thanks in advance
>
> --
> Regards,
> Shachi
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