[Bioperl-l] New perl CUDA bindings

[Smithies, Russell]

Bit of a coincidence, I'm currently looking at GPU stuff as we're putting in a load of them as a new compute cluster. All HP SL390-G7s so if anyone has any experience working with these, please get in touch as I think I'll need a few pointers!

For anyone looking for a good implementation of blast that runs on GPUs, I'd recommend this one: http://eudoxus.cheme.cmu.edu/gpublast/gpublast.html
Compiles easily and runs as it should.
In the past I've tried many of the applications from the "Tesla Bio Workbench" http://www.nvidia.com/object/tesla_bio_workbench.html  and had limited success getting anything to even compile.

--Russell


> -----Original Message-----
> From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l-
> bounces at lists.open-bio.org] On Behalf Of Christopher Fields
> Sent: Saturday, 2 July 2011 1:30 p.m.
> To: BioPerl List
> Subject: [Bioperl-l] New perl CUDA bindings
> 
> All,
> 
> I know there are a number of devs who might be running tasks on GPUs
> these days, just wanted to point out that there are now CUDA bindings
> in Perl available from David Mertens (I'll likely be using them locally
> :)
> 
> These are not present in CPAN yet, but they are on github:
> 
> https://github.com/run4flat/perl-CUDA-Minimal
> 
> Also some demos, latest one here:
> 
> http://blogs.perl.org/users/david_mertens/2011/07/cudaminimal-and-
> error-handling.html
> 
> chris
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