[Bioperl-l] StandAloneBlastPlus blastdbcmd question
Anna Friedlander
anna.fr at gmail.com
Mon Dec 19 07:09:15 UTC 2011
Hi all
I have a question about using blastdbcmd via
Bio::Tools::Run::StandAloneBlastPlus
I have some Blast+ search results that I am manipulating in a perl
programme, and I would like to retrieve some sequence information for
some results using subject sequence IDs, and associated subject start
and end indices. If I was using blastdbcmd directly, I would do so
using the -entry and -range options.
My question is, can I use all the blastdbcmd options (or more
specifically, just the -entry and -range options) from within the
StandAloneBlastPlus module?
My apologies if I don't properly understand how this "wrapper" works!
Thanks in advance for your help
Anna Friedlander
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