[Bioperl-l] Bioperl-l Digest, Vol 104, Issue 3

[Tom Keller]

I'd start by looking for the section "Searching for genes in genomic DNA" in the HOWTO:Beginners - BioPerl website.

Thomas (Tom) Keller, PhD
kellert at ohsu.edu
503.494.2442
6588 R Jones Hall (BSc/CROET)
MMI DNA Services
Member of OHSU Shared Resources

On Dec 3, 2011, at 9:00 AM, <bioperl-l-request at lists.open-bio.org> <bioperl-l-request at lists.open-bio.org> wrote:

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> Today's Topics:
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>   1.  List of genes from genomic intervals (Claudio Scuoppo)
> 
> 
> ----------------------------------------------------------------------
> 
> Message: 1
> Date: Fri, 2 Dec 2011 17:50:28 -0500
> From: Claudio Scuoppo <scuoppo at gmail.com>
> Subject: [Bioperl-l] List of genes from genomic intervals
> To: bioperl-l at lists.open-bio.org
> Message-ID:
> 	<CAEz0Wfv_yj6g5rZEbmj+UhOkJX8ryzObEO7N6rqvLRMV6Yd_Pg at mail.gmail.com>
> Content-Type: text/plain; charset=ISO-8859-1
> 
> Hi,
> 
> I am new to BioPerl. I was wondering what`s the best strategy to get
> the genes contained in a a series of human genomic interval.
> Basically, I have a table with:
> 
> Chromosome Start End
> 
> Which module should I be looking at?
> Thanks,
> Claudio
> 
> 
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> End of Bioperl-l Digest, Vol 104, Issue 3
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