[Bioperl-l] hmmer3/hmmscan parser

[Chris Fields]

To add to this, it appears there was an attempt to commit this code to SVN just prior to the github migration, but nothing is present in the svn repo (which is still reachable, but is read-only).  Empty repos were not migrated over.  Thomas, let me know if you need addition to the github repo, would be easy enough to add this in when ready.

Relevant commit msg here:

http://lists.open-bio.org/pipermail/bioperl-guts-l/2010-May/031172.html

perllib cjfields$ svn ls svn+ssh://dev.open-bio.org/home/svn-repositories/bioperl
===========================================
dev.open-bio.org - Authorized Access Only
===========================================
...<snip irrelevant repos>
bioperl-hmmer3/
...<snip irrelevant repos>
perllib cjfields$ svn ls svn+ssh://dev.open-bio.org/home/svn-repositories/bioperl/bioperl-hmmer3
===========================================
dev.open-bio.org - Authorized Access Only
===========================================
perllib cjfields$ 

chris

On May 21, 2010, at 4:56 PM, Kai Blin wrote:

> Hi list, hi Thomas,
> 
> I've just bumped into the fact that bioperl-live still doesn't seem to
> support the hmmer3 hmmscan output format (thanks for the help at
> #bioperl). The nice folks on IRC pointed me at an email from Thomas
> Sharpton, noting that he was already working on a parser for this. So I
> thought I'd ask about the status of that before I run off writing my
> own. Is there anything I can help with?
> 
> Cheers,
> Kai
> 
> -- 
> Dipl.-Inform. Kai Blin         kai.blin at biotech.uni-tuebingen.de
> Interfakultäres Institut für Mikrobiologie und Infektionsmedizin
> Abteilung Mikrobiologie/Biotechnologie
> Eberhard-Karls-Universität Tübingen
> Auf der Morgenstelle 28                 Phone : ++49 7071 29-78841
> D-72076 Tübingen                        Fax :   ++49 7071 29-5979
> Deutschland
> Homepage: http://www.mikrobio.uni-tuebingen.de/ag_wohlleben
> 
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