[Bioperl-l] from SimpleAlign to SAM/BAM
avilella at gmail.com
Wed May 19 08:36:25 UTC 2010
I would like to know what would be the best way to generate a SAM/BAM file
with cDNA alignments against the human reference from a bunch of
cDNA multiple sequence alignment objects.
Considering I've got a way to map the cDNAs to chromosome coordinates,
how can I generate a SAM/BAM file with ~1,000,000 entries against ~23.000 human
As far as I can see, there is an Bio::Assembly::IO::sam.pm which loads
Should I be using some other tool existing not in bioperl?
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