[Bioperl-l] running perl script

Frank Schwach fs5 at sanger.ac.uk
Mon May 17 08:41:51 UTC 2010

why are you requiring "Bio::Perl"? You would normally use somethink
specific in the BioPerl bundle, like Bio::Seq or whatever. Can you show
some of your script?

On Fri, 2010-05-14 at 11:24 -0500, Srivastava, Subodh K [AGRON] wrote:
> hi,
> I am running a perl script and getting error like:
> Can't locate Bio/Perl.pm in @INC (@INC contains: /home/subodhs/SHORE_map/SHOREmap_release_1.1 /usr/lib64/perl5/site_perl/5.8.8/x86_64-linux-thread-multi /usr/lib/perl5/site_perl/5.8.8 /usr/lib/perl5/site_perl /usr/lib64/perl5/vendor_perl/5.8.8/x86_64-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.8 /usr/lib/perl5/vendor_perl /usr/lib64/perl5/5.8.8/x86_64-linux-thread-multi /usr/lib/perl5/5.8.8 .) at /home/subodhs/SHORE_map/SHOREmap_release_1.1/GeneSNPlist.pm line 12.
> How to set the path for this? 
> the other related scripts are working in same directory.
> I am running;  perl, v5.8.8 built for x86_64-linux-thread-multi
> thank you
> subodh
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