[Bioperl-l] running perl script

[Patrick Boutet]

On Fri, May 14, 2010 at 10:24 AM, Srivastava, Subodh K [AGRON] <
subodhs at iastate.edu> wrote:

> hi,
> I am running a perl script and getting error like:
>
> Can't locate Bio/Perl.pm in @INC (@INC contains:
> /home/subodhs/SHORE_map/SHOREmap_release_1.1
> /usr/lib64/perl5/site_perl/5.8.8/x86_64-linux-thread-multi
> /usr/lib/perl5/site_perl/5.8.8 /usr/lib/perl5/site_perl
> /usr/lib64/perl5/vendor_perl/5.8.8/x86_64-linux-thread-multi
> /usr/lib/perl5/vendor_perl/5.8.8 /usr/lib/perl5/vendor_perl
> /usr/lib64/perl5/5.8.8/x86_64-linux-thread-multi /usr/lib/perl5/5.8.8 .) at
> /home/subodhs/SHORE_map/SHOREmap_release_1.1/GeneSNPlist.pm line 12.
>
> How to set the path for this?
> the other related scripts are working in same directory.
>
> I am running;  perl, v5.8.8 built for x86_64-linux-thread-multi
>
> thank you
> subodh
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Now I'm still new at this but I'll try and be helpful, first where is
bioperl installed? System wide or local to your home directory? Do you have
root access? What type of shell are you using?

Because it seems like you might have to set your shells PERL5LIB variable to
check the directory where bioperl is installed.

Patrick Boutet