[Bioperl-l] running perl script

[Chris Fields]

Frank,

Bio::Perl is the generic user module for very simple tasks.  See here:

http://github.com/bioperl/bioperl-live/blob/master/Bio/Perl.pm

Subodh, you need to make sure the modules are in your perl library path.  See the following link, under 'INSTALLING BIOPERL IN A PERSONAL MODULE AREA':

http://www.bioperl.org/wiki/Installing_Bioperl_for_Unix

chris

On May 17, 2010, at 3:41 AM, Frank Schwach wrote:

> why are you requiring "Bio::Perl"? You would normally use somethink
> specific in the BioPerl bundle, like Bio::Seq or whatever. Can you show
> some of your script?
> Frank
> 
> 
> On Fri, 2010-05-14 at 11:24 -0500, Srivastava, Subodh K [AGRON] wrote:
>> hi,
>> I am running a perl script and getting error like:
>> 
>> Can't locate Bio/Perl.pm in @INC (@INC contains: /home/subodhs/SHORE_map/SHOREmap_release_1.1 /usr/lib64/perl5/site_perl/5.8.8/x86_64-linux-thread-multi /usr/lib/perl5/site_perl/5.8.8 /usr/lib/perl5/site_perl /usr/lib64/perl5/vendor_perl/5.8.8/x86_64-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.8 /usr/lib/perl5/vendor_perl /usr/lib64/perl5/5.8.8/x86_64-linux-thread-multi /usr/lib/perl5/5.8.8 .) at /home/subodhs/SHORE_map/SHOREmap_release_1.1/GeneSNPlist.pm line 12.
>> 
>> How to set the path for this? 
>> the other related scripts are working in same directory.
>> 
>> I am running;  perl, v5.8.8 built for x86_64-linux-thread-multi
>> 
>> thank you
>> subodh
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> 
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