[Bioperl-l] Bio::Index::Fastq - Interface for indexing (multiple) fastq files failure

[Chris Fields]

I think we're going with the AnyDBM option, which allows SQLite if
requested (via Mark's SQLite_DBM).  

chris

On Wed, 2010-04-07 at 16:45 +0100, Peter wrote:
> On Wed, Apr 7, 2010 at 4:25 PM, Cook, Malcolm <MEC at stowers.org> wrote:
> > c.f. http://github.com/acr/screed
> 
> That's the python thing I referred to earlier, which turned out to be much
> slower than SQLite (comparing storing the FASTQ data in an indexed
> form, not just storing the file offsets):
> 
> http://lists.idyll.org/pipermail/biology-in-python/2010-March/000511.html
> http://ivory.idyll.org/blog/mar-10/storing-and-retrieving-sequences.html
> 
> Peter
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