[Bioperl-l] How to parse DBLINK Project linetype in Genbank file
Chris Stubben
stubben at lanl.gov
Wed Oct 21 15:29:03 UTC 2009
I have some Genbank files (from genome sequences) with a DBLINK line type
listing the Entrez genome project id. Is there a way to parse this line?
I can't seem to find it among the Annotation objects using bioperl 1.6.0
(printing all annotations or just dblinks below)
my @annotations = $so->annotation->get_Annotations('dblink'); # nothing
---
LOCUS NC_001664 159322 bp DNA linear VRL
16-OCT-2009
DEFINITION Human herpesvirus 6A, complete genome.
ACCESSION NC_001664
VERSION NC_001664.2 GI:224020395
DBLINK Project:14462
KEYWORDS .
SOURCE Human herpesvirus 6 (HHV-6A)
Thanks,
Chris Stubben
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