[Bioperl-l] How to retrieve info about whether a Seq is a partial or complete CDS
Jason Stajich
jason at bioperl.org
Wed Jan 28 20:37:42 UTC 2009
where is the information in the genbank record (as a text file)?
DEFINITION ?
-jason
On Jan 28, 2009, at 10:02 AM, Christopher Goddard wrote:
> I need to determine if a Bio::Seq object returned from GenBank by a
> Bio::DB::GenBank->get_Stream_by_query() call is a partial or
> complete coding sequence. This information is given in the
> description for a sequence when performing a search on Entrez.
> However, using the method desc() for the sequences returned doesn't
> relay this information, at least not all of the time. If someone
> could point me in the right direction on where I could retrieve this
> information I would be really appreciative.
>
> Thanks
> Chris
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Jason Stajich
jason at bioperl.org
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