[Bioperl-l] Trying to install bioPerl-db on Windows XP
Lori G. Wilson
lorigardnerwilson at earthlink.net
Wed Dec 10 20:06:07 UTC 2008
Hello,
I solved my previous problem (the driver was "Oracle" not "oracle"), but
I hit another snag (see attached). How do these parameters:
{
'port' => '1521',
'schema_sql' => ['../biosql-schema/sql/biosqldb-mysql.sql'],
'dbname' => 'biolori',
'host' => 'Shanie',
'database' => 'biosql',
'password' => 'password',
'user' => 'biolori at pennant',
'driver' => 'Oracle',
}
relate to the following excerpt from my TNSNames.ora file?
PENNANT =
(DESCRIPTION =
(ADDRESS = (PROTOCOL = TCP)(HOST = Shanie)(PORT = 1521))
(CONNECT_DATA =
(SERVER = DEDICATED)
(SERVICE_NAME = pennant.Shanie)
)
)
Thanks again,
Lori
Lori G. Wilson wrote:
> I believe I have run all the prerequistes and am now attempting:
>
> build test
>
> I have attached a screen shot of the errors I'm getting. The only
> error seems to be:
>
> Can't locate object method "new" via package "Bio::DB::DBI::Oracle"
> (perhaps you forgot to load "Bio::DB::DBI::oracle"?) at
> ...\blib\lib/Bio/DB/SimpleDBContext.pm line 368.
> My SimpleDBContext.pm is attached. Line 368 is:
>
> $self->{'dbi'} = $dbimod->new(-dbcontext => $self);
>
> What do you suggest?
>
> Thank you,
>
> Lori
> 510-685-6571
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