[Bioperl-l] FW: release of cipres portal for tree inference

[Hilmar Lapp]

I guess so. That's where RemoteBlast is too, if I'm not mistaken?

What sucks about the UI from a programming perspective is that it  
goes through multiple screens. There may be a lot of screen-scraping.

	-hilmar

On May 19, 2007, at 10:10 PM, Chris Fields wrote:

> I think it would be worthwhile.  Would we place it in bioperl-run?
>
> chris
>
> On May 19, 2007, at 8:36 PM, Hilmar Lapp wrote:
>
>> FYI. Is it worth thinking about implementing a remote access
>> interface to the CIPRES tree inference tools, similar to what we have
>> for RemoteBlast?
>>
>> 	-hilmar
>>
>> Begin forwarded message:
>>
>> From: "Vision, Todd (Biology)" <tjv at bio.unc.edu>
>> Date: May 16, 2007 6:48:49 AM EDT
>> Subject: FW: release of cipres portal for tree inference
>>
>> The CIPRES Central Resource team is pleased to announce the first  
>> public
>> release of the CIPRES portal for Tree Inference.
>>
>> The portal is based on capabilities exposed by the Cipres software
>> libraries, which were constructed as a Joint Effort between Mark  
>> Holder
>> at Florida State University and the SDSC SW engineering team led by
>> Terri Liebowitz.
>>
>> It currently presents Parsimony (PAUP) and Likelihood (GARLI and  
>> RAxML)
>> tools with or without boosting from RecIDCM3 created by Usman  
>> Roshan and
>> co-workers. Nexus and Phylip files are currently supported.
>>
>> The site is available to all, and is underwritten by the CIPRES  
>> cluster
>> at SDSC.
>>
>> The portal is fully supported by the SDSC team, with contributions  
>> and
>> new features introduced by the team in collaboration with Mark Holder
>> and Rutger Vos. At present weekly releases are made with improvements
>> and new features.
>>
>> You can visit the portal at the Cipres Web Site.
>>
>> http://www.phylo.org/sub_sections/portal.htm
>>
>> Please forward this information to anyone you feel may find the
>> portal useful.
>>
>> On behalf of the whole CIPRES team,
>>
>> Mark
>>
>> Mark A. Miller, PhD
>> Principal Investigator, Biology
>> San Diego Supercomputer Center
>> University of California, San Diego
>> La Jolla, CA, 92093-0505
>> Tel: 858-822-0866
>> Fax: 858-822-3610
>>
>> -- 
>> ===========================================================
>> : Hilmar Lapp  -:-  Durham, NC  -:-  hlapp at gmx dot net :
>> ===========================================================
>>
>>
>>
>>
>>
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>> Bioperl-l at lists.open-bio.org
>> http://lists.open-bio.org/mailman/listinfo/bioperl-l
>
> Christopher Fields
> Postdoctoral Researcher
> Lab of Dr. Robert Switzer
> Dept of Biochemistry
> University of Illinois Urbana-Champaign
>
>

-- 
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: Hilmar Lapp  -:-  Durham, NC  -:-  hlapp at gmx dot net :
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