[Bioperl-l] FW: release of cipres portal for tree inference

[Chris Fields]

I think it would be worthwhile.  Would we place it in bioperl-run?

chris

On May 19, 2007, at 8:36 PM, Hilmar Lapp wrote:

> FYI. Is it worth thinking about implementing a remote access
> interface to the CIPRES tree inference tools, similar to what we have
> for RemoteBlast?
>
> 	-hilmar
>
> Begin forwarded message:
>
> From: "Vision, Todd (Biology)" <tjv at bio.unc.edu>
> Date: May 16, 2007 6:48:49 AM EDT
> Subject: FW: release of cipres portal for tree inference
>
> The CIPRES Central Resource team is pleased to announce the first  
> public
> release of the CIPRES portal for Tree Inference.
>
> The portal is based on capabilities exposed by the Cipres software
> libraries, which were constructed as a Joint Effort between Mark  
> Holder
> at Florida State University and the SDSC SW engineering team led by
> Terri Liebowitz.
>
> It currently presents Parsimony (PAUP) and Likelihood (GARLI and  
> RAxML)
> tools with or without boosting from RecIDCM3 created by Usman  
> Roshan and
> co-workers. Nexus and Phylip files are currently supported.
>
> The site is available to all, and is underwritten by the CIPRES  
> cluster
> at SDSC.
>
> The portal is fully supported by the SDSC team, with contributions and
> new features introduced by the team in collaboration with Mark Holder
> and Rutger Vos. At present weekly releases are made with improvements
> and new features.
>
> You can visit the portal at the Cipres Web Site.
>
> http://www.phylo.org/sub_sections/portal.htm
>
> Please forward this information to anyone you feel may find the
> portal useful.
>
> On behalf of the whole CIPRES team,
>
> Mark
>
> Mark A. Miller, PhD
> Principal Investigator, Biology
> San Diego Supercomputer Center
> University of California, San Diego
> La Jolla, CA, 92093-0505
> Tel: 858-822-0866
> Fax: 858-822-3610
>
> -- 
> ===========================================================
> : Hilmar Lapp  -:-  Durham, NC  -:-  hlapp at gmx dot net :
> ===========================================================
>
>
>
>
>
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Christopher Fields
Postdoctoral Researcher
Lab of Dr. Robert Switzer
Dept of Biochemistry
University of Illinois Urbana-Champaign