[Bioperl-l] FW: release of cipres portal for tree inference

[Jason Stajich]

technically remoteblast is in bioperl-live, but for historical/ease  
of user-install purposes (i.e. so many people want to use blast out  
of the box, we kept it in bioperl-live to not force them to install  
bioperl-run).

I think it would be great to have the interface - can we do it all  
via HTTP or will it require some installation of client software and/ 
or CORBA?

-jason
On May 19, 2007, at 7:19 PM, Hilmar Lapp wrote:

> I guess so. That's where RemoteBlast is too, if I'm not mistaken?
>
> What sucks about the UI from a programming perspective is that it
> goes through multiple screens. There may be a lot of screen-scraping.
>
> 	-hilmar
>
> On May 19, 2007, at 10:10 PM, Chris Fields wrote:
>
>> I think it would be worthwhile.  Would we place it in bioperl-run?
>>
>> chris
>>
>> On May 19, 2007, at 8:36 PM, Hilmar Lapp wrote:
>>
>>> FYI. Is it worth thinking about implementing a remote access
>>> interface to the CIPRES tree inference tools, similar to what we  
>>> have
>>> for RemoteBlast?
>>>
>>> 	-hilmar
>>>
>>> Begin forwarded message:
>>>
>>> From: "Vision, Todd (Biology)" <tjv at bio.unc.edu>
>>> Date: May 16, 2007 6:48:49 AM EDT
>>> Subject: FW: release of cipres portal for tree inference
>>>
>>> The CIPRES Central Resource team is pleased to announce the first
>>> public
>>> release of the CIPRES portal for Tree Inference.
>>>
>>> The portal is based on capabilities exposed by the Cipres software
>>> libraries, which were constructed as a Joint Effort between Mark
>>> Holder
>>> at Florida State University and the SDSC SW engineering team led by
>>> Terri Liebowitz.
>>>
>>> It currently presents Parsimony (PAUP) and Likelihood (GARLI and
>>> RAxML)
>>> tools with or without boosting from RecIDCM3 created by Usman
>>> Roshan and
>>> co-workers. Nexus and Phylip files are currently supported.
>>>
>>> The site is available to all, and is underwritten by the CIPRES
>>> cluster
>>> at SDSC.
>>>
>>> The portal is fully supported by the SDSC team, with contributions
>>> and
>>> new features introduced by the team in collaboration with Mark  
>>> Holder
>>> and Rutger Vos. At present weekly releases are made with  
>>> improvements
>>> and new features.
>>>
>>> You can visit the portal at the Cipres Web Site.
>>>
>>> http://www.phylo.org/sub_sections/portal.htm
>>>
>>> Please forward this information to anyone you feel may find the
>>> portal useful.
>>>
>>> On behalf of the whole CIPRES team,
>>>
>>> Mark
>>>
>>> Mark A. Miller, PhD
>>> Principal Investigator, Biology
>>> San Diego Supercomputer Center
>>> University of California, San Diego
>>> La Jolla, CA, 92093-0505
>>> Tel: 858-822-0866
>>> Fax: 858-822-3610
>>>
>>> -- 
>>> ===========================================================
>>> : Hilmar Lapp  -:-  Durham, NC  -:-  hlapp at gmx dot net :
>>> ===========================================================
>>>
>>>
>>>
>>>
>>>
>>> _______________________________________________
>>> Bioperl-l mailing list
>>> Bioperl-l at lists.open-bio.org
>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l
>>
>> Christopher Fields
>> Postdoctoral Researcher
>> Lab of Dr. Robert Switzer
>> Dept of Biochemistry
>> University of Illinois Urbana-Champaign
>>
>>
>
> -- 
> ===========================================================
> : Hilmar Lapp  -:-  Durham, NC  -:-  hlapp at gmx dot net :
> ===========================================================
>
>
>
>
>
> _______________________________________________
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> Bioperl-l at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/bioperl-l

--
Jason Stajich
jason at bioperl.org
http://jason.open-bio.org/


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