[Bioperl-l] Two Bio::DB::Flat swiss adaptors
Seongwon "Terry" Seo
swseo at uiuc.edu
Wed Mar 21 22:02:13 UTC 2007
I have a question regarding SwissProt.
One ID can have multiple accessions in SwissProt, but I cannot find where
they are saved in Bioperl::Seq. Is there anyone can help me on this?
Terry Seo.
-----Original Message-----
From: bioperl-l-bounces at lists.open-bio.org
[mailto:bioperl-l-bounces at lists.open-bio.org] On Behalf Of Chris Fields
Sent: Tuesday, March 20, 2007 11:34 PM
To: Bioperl-L list
Subject: [Bioperl-l] Two Bio::DB::Flat swiss adaptors
Just curious, but why are there two Bio::DB::Flat::BDB swissprot
adaptors (Bio::DB::Flat::BDB::swiss, Bio::DB::Flat::BDB::swissprot)?
The only significant difference between the two is the following line
in seq_to_ids():
Bio::DB::Flat::BDB::swiss : $ids{VERSION} = "$accession.$version"
if defined $accession && defined $version;
Bio::DB::Flat::BDB::swiss : $ids{VERSION} = "$accession.version"
if defined $accession && defined $version;
The second is missing '$' in version, which I'm guessing is a bug?
chris
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