[Bioperl-l] Bio::SeqIO::FTHelper
Heikki Lehvaslaiho
heikki at sanbi.ac.za
Thu Mar 1 11:02:30 UTC 2007
Chris,
It was meant to collect code that was common to all three main databases using
similar feature tables.
Now might be the time to optimise the parsing speed by removing it. Do you
have a plan how to do it?
-Heikki
On Tuesday 27 February 2007 22:57:40 Chris Fields wrote:
> Could anyone tell me what FTHelper is used for? From what I gather
> it rolls up seqfeature data into a lightweight object but then
> creates a SeqFeature::Generic anyway (at least for GenBank/EMBL/
> Swiss), which seems to be a waste of memory and time. Is there
> something I'm missing (besides my sanity of course)?
>
> chris
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_/ _/
_/ _/ _/ Heikki Lehvaslaiho heikki at_sanbi _ac _za
_/_/_/_/_/ Associate Professor skype: heikki_lehvaslaiho
_/ _/ _/ SANBI, South African National Bioinformatics Institute
_/ _/ _/ University of Western Cape, South Africa
_/ Phone: +27 21 959 2096 FAX: +27 21 959 2512
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