[Bioperl-l] Bio::Ontology::Term (rollback question)

Chris Fields cjfields at uiuc.edu
Mon Aug 27 22:31:01 UTC 2007


This is related to the ongoing Feature/Annotation rollback.  I have  
found that a few Ontology-related modules are (either directly or  
indirectly) passing strings instead of Bio::Annotation::DBLinks to  
Bio::Ontology::Term::new(), add_dblink(), or add_dblink_context()  
(thelast is where the error occurs).

If needed we could allow strings to be passed but this isn't  
consistent with the API.  Any thoughts on what to do here?

chris



More information about the Bioperl-l mailing list