[Bioperl-l] Homologene parser?

Chris Fields cjfields at uiuc.edu
Tue Aug 14 03:21:54 UTC 2007

It looks like Heikki responded and thought a good place for it would  
be Bio::SeqIO, but it didn't go anywhere I suppose.  I see that a few  
other posts suggest it could be placed in Bio::Cluster as well which  
I'm not familiar with.  We could add it in if you were still  
interested, just need to find a good place for it; might be nice to  
have a Parse::RecDescent-based parser.


On Aug 13, 2007, at 7:52 PM, Andrew Macgregor wrote:

> On 13/08/2007, at 6:29 PM, neeti somaiya wrote:
>> Hi,
>> Does anyone know of any Homologene parser, if available?
>> Please let me know.
>> Thanks and Regards,
>> Neeti.
> Hi Neeti,
> Quite a long time ago now I wrote an Homologene parser and posted it
> to the mailing list:
> <http://www.bioperl.org/pipermail/bioperl-l/2002-February/007288.html>
> I don't know if this still works but you could use it as a starting
> point. There may also be something newer out there too, I don't know.
> If you search the mailing list archives you'll get a few messages
> around the topic.
> Cheers, Andrew.
> Andrew Macgregor
> Centre for Comparative Genomics, Murdoch University
> Email: amacgregor at ccg.murdoch.edu.au
> Tel: (08) 9360 2961
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Christopher Fields
Postdoctoral Researcher
Lab of Dr. Robert Switzer
Dept of Biochemistry
University of Illinois Urbana-Champaign

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