[Bioperl-l] SimpleAlign add_seq ("%s/%d-%d",$id,$start,$end)

[Jason Stajich]

I assume this is in the context of writing out the alignment?

Do this before you write out the alignment:
$aln->set_displayname_flat(1);

-jason

On Oct 14, 2005, at 4:39 AM, Albert Vilella wrote:

> Hi all,
>
> I was wondering why the add_seq method in SimpleAlign will always give
> the name of the sequence accompanied by a start and end tag.
>
> SimpleAlign.pm
> line 256:
>     $name = sprintf("%s/%d-%d",$id,$start,$end);
>
> In one of my scripts I am using this method by I would not like to  
> have
> this "/%d-%d" tail in the sequences' names.
>
> How do you think this should be addressed? Am I using a bad  
> combination
> of method calls for my script?
>
> Bests,
>
>     Albert.
>
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--
Jason Stajich
Duke University
http://www.duke.edu/~jes12