[Bioperl-l] Problem of installing bioperl-run-1.4

[Jason Stajich]

did you make sure the EMBOSS bin directory is in your PATH?

-jason
-- 
Jason Stajich
jason.stajich at duke.edu
http://www.duke.edu/~jes12/


Quoting "Yu-Hsuan Lin(ªL¦t°a)" <ylin9 at gel.ym.edu.tw>:

> Hi, all,
> 
> I have a problem to install bioperl-run-1.4. Because I want to use EMBOSS
> program within
> 
> my bioperl script, I installed bioperl 1.4 and EMBOSS (
> /home/tools/EMBOSS-2.10.0 ) in
> 
> my debian linux system. When I tried to type in command line "make test", it
> said
> 
> t/EMBOSS..................ok                                                
> 
>         28/30 skipped: EMBOSS not installed locally or XML::Twig not
> installed
> 
> 
> I also installed XML::Twig and tried symbolic link from /usr/local to
> 
> /home/tools/EMBOSS-2.10.0 but still get the same message. Can anyone kindly
> tell me how to
> 
> solve this problem or where to find solution ?
> 
> Thank you very much,
> 
> Vincent,
> 
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