[Bioperl-l] problems during installation

[Chris Dagdigian]

You may want to check SuSE's software install tool (YaST) -- the GD  
perl module is usually included in an RPM and the version in Suse's  
repository may be modern enough for what you need - it will remove  
the need for you to find and deal with libgd. You should also check  
with YaST to see if the updated libgd is available in case you need  
to build the perl GD module from source.

-Chris





On Jun 24, 2005, at 10:59 AM, Leonardo Kenji Shikida wrote:

> trying to install using perl -MCPAN -e "install Bundle::BioPerl" in a
> suse 9.3 box
>
> how should I proceed?
>
>
>>>>>>>>>
>>>>>>>>>
>
>   CPAN.pm: Going to build L/LD/LDS/GD-2.19.tar.gz
>
> NOTICE: This module requires libgd 2.0.28 or higher.
>         it will NOT work with earlier versions. If you are getting
>         compile or link errors, then please get and install a new
>         version of libgd from www.boutell.com. Do NOT ask Lincoln
>         for help until you try this.
>
>         If you are using Math::Trig 1.01 or lower, it has a bug that
>         causes a "prerequisite not found" warning to be issued.   
> You may
>         safely ignore this warning.
>
>         Type perl Makefile.PL -h for command-line option summary
>
> Configuring for libgd version 2.0.32.
> Included Features:          GD_XPM GD_JPEG GD_FONTCONFIG  
> GD_FREETYPE GD_PNG GD_G
> IF
> GD library used from:       /usr
>
> If you experience compile problems, please check the @INC, @LIBPATH  
> and @LIBS
> arrays defined in Makefile.PL and manually adjust, if necessary.
>
> Checking if your kit is complete...
> Looks good
> Writing Makefile for GD
> cp GD/Polyline.pm blib/lib/GD/Polyline.pm
> cp qd.pl blib/lib/qd.pl
> cp GD.pm blib/lib/GD.pm
> AutoSplitting blib/lib/GD.pm (blib/lib/auto/GD)
> cp GD/Simple.pm blib/lib/GD/Simple.pm
> /usr/bin/perl /usr/lib/perl5/5.8.6/ExtUtils/xsubpp  -typemap /usr/ 
> lib/perl5/5.8.
> 6/ExtUtils/typemap -typemap typemap  GD.xs > GD.xsc && mv GD.xsc GD.c
> cc -c  -I/usr/include -D_REENTRANT -D_GNU_SOURCE - 
> DTHREADS_HAVE_PIDS -DDEBUGGING
>  -fno-strict-aliasing -pipe -D_LARGEFILE_SOURCE - 
> D_FILE_OFFSET_BITS=64 -O2 -marc
> h=i586 -mcpu=i686 -fmessage-length=0 -Wall -g -Wall -pipe   - 
> DVERSION=\"2.19\" -
> DXS_VERSION=\"2.19\" -fPIC "-I/usr/lib/perl5/5.8.6/i586-linux- 
> thread-multi/CORE"
>   -DHAVE_JPEG -DHAVE_FT -DHAVE_XPM -DHAVE_GIF -DHAVE_PNG - 
> DHAVE_FONTCONFIG GD.c
> GD.xs:7:16: gd.h: No such file or directory
> GD.xs:8:21: gdfontg.h: No such file or directory
> GD.xs:9:21: gdfontl.h: No such file or directory
> GD.xs:10:22: gdfontmb.h: No such file or directory
>
>
> -- 
>
> []
>
> Kenji
> _______________________
> http://kenjiria.blogspot.com
> http://gaitabh.blogspot.com
>
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l at portal.open-bio.org
> http://portal.open-bio.org/mailman/listinfo/bioperl-l
>