[Bioperl-l] problems during installation

[Frank Lee]

Just guess,  I believe the answer is given when you configing as this :

If you experience compile problems, please check the @INC, @LIBPATH and @LIBS
arrays defined in Makefile.PL and manually adjust, if necessary.

For me, I will locate these files and find where they are and add them to the @INC or @LIBPATH, etc. 

Wish you luck





\
Leonardo Kenji Shikida wrote:

>trying to install using perl -MCPAN -e "install Bundle::BioPerl" in a
>suse 9.3 box
>
>how should I proceed? 
>
>  
>
>
>  CPAN.pm: Going to build L/LD/LDS/GD-2.19.tar.gz
>
>NOTICE: This module requires libgd 2.0.28 or higher.
>        it will NOT work with earlier versions. If you are getting
>        compile or link errors, then please get and install a new
>        version of libgd from www.boutell.com. Do NOT ask Lincoln
>        for help until you try this.
>
>        If you are using Math::Trig 1.01 or lower, it has a bug that
>        causes a "prerequisite not found" warning to be issued.  You may
>        safely ignore this warning.
>
>        Type perl Makefile.PL -h for command-line option summary
>
>Configuring for libgd version 2.0.32.
>Included Features:          GD_XPM GD_JPEG GD_FONTCONFIG GD_FREETYPE GD_PNG GD_G
>IF
>GD library used from:       /usr
>
>If you experience compile problems, please check the @INC, @LIBPATH and @LIBS
>arrays defined in Makefile.PL and manually adjust, if necessary.
>
>Checking if your kit is complete...
>Looks good
>Writing Makefile for GD
>cp GD/Polyline.pm blib/lib/GD/Polyline.pm
>cp qd.pl blib/lib/qd.pl
>cp GD.pm blib/lib/GD.pm
>AutoSplitting blib/lib/GD.pm (blib/lib/auto/GD)
>cp GD/Simple.pm blib/lib/GD/Simple.pm
>/usr/bin/perl /usr/lib/perl5/5.8.6/ExtUtils/xsubpp  -typemap /usr/lib/perl5/5.8.
>6/ExtUtils/typemap -typemap typemap  GD.xs > GD.xsc && mv GD.xsc GD.c
>cc -c  -I/usr/include -D_REENTRANT -D_GNU_SOURCE -DTHREADS_HAVE_PIDS -DDEBUGGING
> -fno-strict-aliasing -pipe -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -marc
>h=i586 -mcpu=i686 -fmessage-length=0 -Wall -g -Wall -pipe   -DVERSION=\"2.19\" -
>DXS_VERSION=\"2.19\" -fPIC "-I/usr/lib/perl5/5.8.6/i586-linux-thread-multi/CORE"
>  -DHAVE_JPEG -DHAVE_FT -DHAVE_XPM -DHAVE_GIF -DHAVE_PNG -DHAVE_FONTCONFIG GD.c
>GD.xs:7:16: gd.h: No such file or directory
>GD.xs:8:21: gdfontg.h: No such file or directory
>GD.xs:9:21: gdfontl.h: No such file or directory
>GD.xs:10:22: gdfontmb.h: No such file or directory
>
>
>  
>