[Bioperl-l] Problem of installing bioperl-run-1.4

[Yu-Hsuan Lin(???)]

$ perl -I. -w t/EMBOSS.t
1..30
# Running under perl version 5.008006 for linux
# Current time local: Mon Jul  4 13:01:26 2005
# Current time GMT:   Mon Jul  4 05:01:26 2005
# Using Test.pm version 1.25
ok 1
ok 2
ok 3 # skip EMBOSS not installed locally or XML::Twig not installed
ok 4 # skip EMBOSS not installed locally or XML::Twig not installed
ok 5 # skip EMBOSS not installed locally or XML::Twig not installed
ok 6 # skip EMBOSS not installed locally or XML::Twig not installed
ok 7 # skip EMBOSS not installed locally or XML::Twig not installed
ok 8 # skip EMBOSS not installed locally or XML::Twig not installed
ok 9 # skip EMBOSS not installed locally or XML::Twig not installed
ok 10 # skip EMBOSS not installed locally or XML::Twig not installed
ok 11 # skip EMBOSS not installed locally or XML::Twig not installed
ok 12 # skip EMBOSS not installed locally or XML::Twig not installed
ok 13 # skip EMBOSS not installed locally or XML::Twig not installed
ok 14 # skip EMBOSS not installed locally or XML::Twig not installed
ok 15 # skip EMBOSS not installed locally or XML::Twig not installed
ok 16 # skip EMBOSS not installed locally or XML::Twig not installed
ok 17 # skip EMBOSS not installed locally or XML::Twig not installed
ok 18 # skip EMBOSS not installed locally or XML::Twig not installed
ok 19 # skip EMBOSS not installed locally or XML::Twig not installed
ok 20 # skip EMBOSS not installed locally or XML::Twig not installed
ok 21 # skip EMBOSS not installed locally or XML::Twig not installed
ok 22 # skip EMBOSS not installed locally or XML::Twig not installed
ok 23 # skip EMBOSS not installed locally or XML::Twig not installed
ok 24 # skip EMBOSS not installed locally or XML::Twig not installed
ok 25 # skip EMBOSS not installed locally or XML::Twig not installed
ok 26 # skip EMBOSS not installed locally or XML::Twig not installed
ok 27 # skip EMBOSS not installed locally or XML::Twig not installed
ok 28 # skip EMBOSS not installed locally or XML::Twig not installed
ok 29 # skip EMBOSS not installed locally or XML::Twig not installed
ok 30 # skip EMBOSS not installed locally or XML::Twig not installed

I don't think I need to set $PATH for XML::Twig, should I ?
I installed XML::Twig with CPAN, and it up to date.

Vincent.
  ----- Original Message ----- 
  From: Jason Stajich 
  To: Yu-Hsuan Lin ((???)) 
  Cc: bioperl-l at portal.open-bio.org 
  Sent: Sunday, July 03, 2005 11:43 PM
  Subject: Re: [Bioperl-l] Problem of installing bioperl-run-1.4 






  What do you see when you run the test individually, you will get more detailed error messages.


  $ perl -I. -w t/EMBOSS.t




  On Jul 3, 2005, at 9:00 AM, Yu-Hsuan Lin((???)) wrote:





      Quoting "Yu-Hsuan Lin(ªL¦t°a)" <ylin9 at gel.ym.edu.tw>:






        Hi, all,




        I have a problem to install bioperl-run-1.4. Because I want to use EMBOSS

        program within




        my bioperl script, I installed bioperl 1.4 and EMBOSS (

        /home/tools/EMBOSS-2.10.0 ) in




        my debian linux system. When I tried to type in command line "make test", it

        said




        t/EMBOSS..................ok




                28/30 skipped: EMBOSS not installed locally or XML::Twig not

        installed







        I also installed XML::Twig and tried symbolic link from /usr/local to




        /home/tools/EMBOSS-2.10.0 but still get the same message. Can anyone kindly

        tell me how to




        solve this problem or where to find solution ?




        Thank you very much,




        Vincent,




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  --
  Jason Stajich
  Duke University
  http://www.duke.edu/~jes12/