[Bioperl-l] Problem of installing bioperl-run-1.4

[Yu-Hsuan Lin(???)]

Thank your for your reply.
I can run EMBOSS program directly by typing the program name in my home 
directory.
And it is what I got by typing echo $PATH

/usr/lib/j2re1.5-sun/bin:/usr/lib/j2re1.5-sun:/var/local/sbin:/var/local/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/games:/home/tools/EMBOSS-2.10.0:/home/tools/EMBOSS-2.10.0/emboss

But I still get the same error message when I type "make test" in command 
line.
Please help me with this problem.
Thank you very much.

Vincent.

----- Original Message ----- 
From: "Jason Stajich" <jason.stajich at duke.edu>
To: "Yu-Hsuan Lin(ªL¦t°a)" <ylin9 at gel.ym.edu.tw>
Cc: <bioperl-l at portal.open-bio.org>
Sent: Thursday, June 30, 2005 11:40 PM
Subject: Re: [Bioperl-l] Problem of installing bioperl-run-1.4


> did you make sure the EMBOSS bin directory is in your PATH?
>
> -jason
> -- 
> Jason Stajich
> jason.stajich at duke.edu
> http://www.duke.edu/~jes12/
>
>
> Quoting "Yu-Hsuan Lin(ªL¦t°a)" <ylin9 at gel.ym.edu.tw>:
>
>> Hi, all,
>>
>> I have a problem to install bioperl-run-1.4. Because I want to use EMBOSS
>> program within
>>
>> my bioperl script, I installed bioperl 1.4 and EMBOSS (
>> /home/tools/EMBOSS-2.10.0 ) in
>>
>> my debian linux system. When I tried to type in command line "make test", 
>> it
>> said
>>
>> t/EMBOSS..................ok
>>
>>         28/30 skipped: EMBOSS not installed locally or XML::Twig not
>> installed
>>
>>
>> I also installed XML::Twig and tried symbolic link from /usr/local to
>>
>> /home/tools/EMBOSS-2.10.0 but still get the same message. Can anyone 
>> kindly
>> tell me how to
>>
>> solve this problem or where to find solution ?
>>
>> Thank you very much,
>>
>> Vincent,
>>
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>> Bioperl-l at portal.open-bio.org
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>>
>