[Bioperl-l] TypedSeqFeatureI is in; tests which fail

[Ewan Birney]

Jason Stajich wrote:
> They all pass for me on OSX, and linux.  What version of perl?
> 

[Ewan-Birneys-Computer:wise2/src/network] birney% perl -v

This is perl, v5.6.0 built for darwin

Copyright 1987-2000, Larry Wall



> Do you have IO::String installed?  I believe the last tests in PAML are 
> parsing trees and assigning rates and parameters to branches.
> more details there if you can't track it down.
> 


I have got IO::String installed. I'll dig.


> I found that SearchIO was just a count getting set wrong for test count 
> in when necessary XML modules are not installed.  fixed that.
> 

Great.


> -jason
> On Aug 25, 2005, at 11:56 AM, Ewan Birney wrote:
> 
>>
>> TypedSeqFeatureI is in. Implementation coming.
>>
>>
>> Some tests are failing for me (not related to sequence
>> features)
>>
>>
>> Failed Test       Stat Wstat Total Fail  Failed  List of Failed
>> -------------------------------------------------------------------------------
>> t/Index.t           79 20224    47    0   0.00%  ??
>> t/PAML.t                       166   14   8.43%  153-166
>> t/RestrictionIO.t               14    1   7.14%  10
>> t/SearchIO.t                  1227    4   0.33%  1224-1227
>> 145 subtests skipped.
>> Failed 4/201 test scripts, 98.01% okay. 19/9625 subtests failed, 
>> 99.80% okay.
>>
>>
>> I'll dig around on these, but can't promise to sort them out.
>>
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> 
> --
> 
> Jason Stajich
> 
> jason.stajich at duke.edu
> 
> http://www.duke.edu/~jes12/
> 
> 
>