[Bioperl-l] TypedSeqFeatureI is in; tests which fail

[Jason Stajich]

They all pass for me on OSX, and linux.  What version of perl?

Do you have IO::String installed?  I believe the last tests in PAML  
are parsing trees and assigning rates and parameters to branches.
more details there if you can't track it down.

I found that SearchIO was just a count getting set wrong for test  
count in when necessary XML modules are not installed.  fixed that.

-jason
On Aug 25, 2005, at 11:56 AM, Ewan Birney wrote:

>
> TypedSeqFeatureI is in. Implementation coming.
>
>
> Some tests are failing for me (not related to sequence
> features)
>
>
> Failed Test       Stat Wstat Total Fail  Failed  List of Failed
> ---------------------------------------------------------------------- 
> ---------
> t/Index.t           79 20224    47    0   0.00%  ??
> t/PAML.t                       166   14   8.43%  153-166
> t/RestrictionIO.t               14    1   7.14%  10
> t/SearchIO.t                  1227    4   0.33%  1224-1227
> 145 subtests skipped.
> Failed 4/201 test scripts, 98.01% okay. 19/9625 subtests failed,  
> 99.80% okay.
>
>
> I'll dig around on these, but can't promise to sort them out.
>
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--
Jason Stajich
jason.stajich at duke.edu
http://www.duke.edu/~jes12/