[Bioperl-l] make test errors

[amackey at pcbi.upenn.edu]

I thought I'd fixed this; the refm data file was corrupt somehow (had newlines
in the middle of journal entries) ...

-Aaron

Quoting Jason Stajich <jason.stajich at duke.edu>:

> RestrictionIO.t still fails on perl 5.6.0 and darwin.  I'm not sure if
> this a broken perl on OSX problem or 5.6.0 bug.  If anyone has 5.6.0 on
> a linux system would be nice to know if the test still fails.
>
> We need to either put a workaround in the test or figure out why the
> parser isn't getting everything it is supposed to get (failing on test
> 9 the withrefm.pm parser).
>
> -jason
> On Nov 19, 2004, at 9:51 AM, Jason Stajich wrote:
>
> >
> > On Nov 18, 2004, at 6:43 PM, Allen Day wrote:
> >
> >> FAILED:
> >> -------
> >> t/LiveSeq.t                    48    1   2.08%  19
> >> t/SeqFeature.t      9  2304   192    0   0.00%  ??
> >> t/Unflattener.t     9  2304     6    4  66.67%  5-6
> >> t/Unflattener2.t               11    2  18.18%  7 10
> >> t/hmmer.t                     136   16  11.76%  8 13 30 33-40 137-141
> >> -------
> >>
> >> i'm also getting *a lot* of "isn't numeric warning messages that look
> >> like
> >> this:
> >>
> >> Argument ">81297" isn't numeric in numeric gt (>) at
> >> .../bioperl-live/blib/lib/Bio/Factory/FTLocationFactory.pm line 217,
> >> <GEN3> line 860.
> >>
> > this is fixed now. my bad.
> >
> > Can't reproduce any of the failed tests with CVS live now.
> >
> >> [15:41]aday at asti:~/cvsroot/bioperl-live> uname -a
> >> Linux asti.ev.affymetrix.com 2.6.8-1.521 #1 Mon Aug 16 09:01:18 EDT
> >> 2004 i686 i686 i386 GNU/Linux
> >> [15:42]aday at asti:~/cvsroot/bioperl-live> perl -v
> >>
> >> This is perl, v5.6.1 built for i686-linux
> >> ...
> >>
> >> -Allen
> >> _______________________________________________
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> >> Bioperl-l at portal.open-bio.org
> >> http://portal.open-bio.org/mailman/listinfo/bioperl-l
> >>
> >>
> > --
> > Jason Stajich
> > jason.stajich at duke.edu
> > http://www.duke.edu/~jes12/
> >
> > _______________________________________________
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> > Bioperl-l at portal.open-bio.org
> > http://portal.open-bio.org/mailman/listinfo/bioperl-l
> >
> >
> --
> Jason Stajich
> jason.stajich at duke.edu
> http://www.duke.edu/~jes12/
>
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